The C program find_MIEs_from_trio_withStats_v3.c finds MIEs (Mendelian inheritance errors) within a trio. As input, the program uses the results of the cgatools “testvariants” command (see the CGATM Tools documentation for more information on testvariants and related commands). The output of this program is a file listing all MIEs that are detected among the three input trio genomes. The output file consists of the full contents of the original input file and three appended columns, each corresponding to one of the input trio genomes.
v2 fixes a segmentation fault problem experienced by some users.
v3 adds stats output.
Download the tool here.