Analysis Tools
Data Results
Complete Genomics provides a comprehensive set of analyzed sequence data from each germline or tumor genome sequenced.
Analysis results include all variant calls, which are variations found in the genome being sequenced when compared to a human reference genome, as well as the underlying raw reads and mappings.
Our robust Analysis Pipeline produces a thorough analysis report of each sequenced genome, containing a detailed depiction of the single nucleotide polymorphisms, copy number variations, insertions, deletions, structural variations and mobile element insertions that are identified in the sequenced genome, as well as functional annotations. Rather than running mapping, assembly and variant calling software, your time can be applied to filtering variants and determining biological relevance of key variants.
For more information please visit our documentation page.
Data Analysis
Researchers find our variant files are a good place to start their analysis. Others may want to explore the evidence files or reads and mappings. Complete Genomics provides a set of open source software, CGA™ Tools for further analysis of Complete Genomics data. Also, several third-party software providers have developed tools for performing analysis including visualization of the data. For a list of third-party providers, click here.
Bioinformatics Support
Our expert bioinformatics support teams are a valuable resource for you, at all phases of your study. They provide extensive training and educational resources to help maximize productivity and proficiency with our data. Our training program is customized to your needs. It is recommended that customers schedule training before receiving the first data set.
Our dedicated team of informatics scientists is available to provide answers, insight and assistance, including both online, email, phone or in-person support.
Please contact them at 1-855-267-5383 or support@completegenomics.com
Complete Community
You can also communicate with your peers and other customers, post questions to our forum and learn about important tips by being part of our User Community. Scan our Tool Repository and Knowledge Base for additional scripts and automated workflows, but most importantly, join a community of scientists dedicated to successful sequencing projects.